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BIMCORE Center for Systems Imaging  · CSI-PET Center  · CSI-BITC DNA Sequencing Robert P. Apkarian Integrated Electron Microscopy Core Flow Cytometry Microchemical & Proteomics Transgenic Mouse & Gene-Targeting

Software at BimCore

Molecular Visualization, Homology Modelling, Microarray and Pathways, Sequence Analysis

Molecular Visualization

Molecular Visualization
Name Description Download Tutorials
Sybyl Biomolecular visualization, manipulation, building and design Linux, Onsite Online

Protein Explorer,

Rasmol

Molecular Visualization Windows, Mac, Linux  
Swiss PDBViewer      
UCSF Chimera An extensible molecular modelling system  

1. Getting started

2. User's Guide

Homology Modelling

Homology Modelling
Name Description Download Tutorials
Modeller

Structural modelling, A. Sali (ref)

Sali URL

Unix

Web Interface

Manual,

Tutorial,

Class

Threader Sequence to Structure alignment (ref)

Unix

Web Interface

Class
       

Microarray Analysis

Microarray Analysis
Name Description Download Tutorials
GeneSpring      
R Bioconductor      
       

Sequence Analysis

Sequence Analysis
Name Description Download Tutorials
DNAStar      
GCG      
BLAST      

High Performance Computing

High Performance Computing
Name Description Download Tutorials