Useful Links to the outside world

*Sequence Analysis on the Web*

Emory Centers

Primer Design links
Amino Acid Comp Analysis Protein Identification in SwissProt and PIR using Amino Acid Composition at EMBL-Heidelberg
ATLAS Search DNA and Protein Sequence Databases at MIPS, Germany
BCM Search Launcher at Baylor College of Medicine
BLAST Basic Local Alignment Research Tool at NCBI
dbEST Database of Expressed Sequence Tags at NCBI
DSSP Database of Secondary Structure of Proteins from PDB at EMBL-Heidelberg
EPD Eucaryotic Promoter Database at EMBL-Heidelberg, Germany
GenBank Database (+Updates) at NCBI
GeneMark : Borodovsky's Homepage
GeneMark Gene Finder
Gene Finder Predict Gene Structure, Internal Exons and Splicing Sites in DNA and Exon-Exon Junstion in cDNA at Baylor College of Medicine
Grail Analysis of the Protein Coding Potential of a DNA Sequence
MGD Mouse Genome Database at Jackson Laboratory
NRL_3D Sequence/Structure Database derived from PDB at Johns Hopkins
OMIM Online Mendelian Inheritance in Man
SignalScan Signal Scan for homology to signal sequences.
SWISSDOM SwissProt Entries in a ProDom Map at EBI
TFD Transcription Factor Database at NIH
TFFACTOR and TFSITE Transcription Factor Data at EMBL-Heidelberg

Brookhaven Protein databank: Protein Data Bank Structures at Brookhaven National Laboratory
Swiss-Prot is a curated protein sequence database which provides annotations and integration with other databases.
BLOCKS Database of Highly Conserved Regions in Proteins at Fred Hutchinson Cancer Research Center
Coils Prediction of Coiled Coil Regions in Protein Sequences at ISREC, Switzerland
FSSP Database of Families of Structurally Similar Proteins derived from PDB at EMBL-Heidelberg
HSSP Database of Homology-Derived Structures of Proteins based on PDB and SwissProt at EMBL
Molecules R US Interactive Text and Images of PDB Files at NIH
PHD Predict Protein Secondary Structure at EMBL-Heidelberg
PredictProtein Predict Protein Secondary Structure at EMBL-Heidelberg
ProDom A Protein Domain Database and ProDom-Search at INRA-Toulouse, France
PSORT Predict Protein Sorting Signals Coded in Amino Acid Sequences at GenomeNet, Japan
PSSP Protein Secondary Structure Prediction at Baylor College of Medicine
Swiss-Model Automated Protein Modelling at ExPASy, Switzerland
RADAR by the European Bioinformatics Institute

Color structure by alignment
3DALIGN - tool to provide a 3D image of the Protein Structure Alignment results by using STRALIGN program
XdomView - align exon / intron to protein structure

FoReSST - FOld REcognition from Secondary STructure prediction
FUGUE - A fold recognition method using structural environment-specific substitution tables and structure-dependent gap penalties