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Software and Services: Lasergene

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sequence analysis software is available to BimCore Subscribers at Emory University. The package represents a comprehensive suite of tools for Sequence Assembly , Gene Discovery , Protein Structure Prediction , Sequence Alignment , Primer Design , Restriction Mapping , and much more. Every module includes built-in Internet Connectivity (for accessing NCBI BLAST and Entrez services) and many other features that make the software so easy to use. Available for Macintosh and Windows, Lasergene has extensive Import/Export capabilities that give you access to all popular sequence formats and lets you share your results more easily with others. Please see our Instructions link to initiate service

 

Sequence Analysis Capabilities Module/Info
    Assemble sequences
    • Trim poor data and remove vector
    • Manage and order contigs
    • Locate potential SNPs
    • Visualize traces and compare two consensus calls

SeqMan Pro
    Discover and annotate genes
    • Predict coding regions and splice sites
    • Locate repeats, patterns, or areas matching known sequence data
    • Simulate agarose gel electrophoresis

GeneQuest
    Predict protein structures
    • View PAGE simulations
    • Analyze physico-chemical properties
    • Display results graphically

Protean
    Align DNA and protein sequences
    • Perform pairwise, multiple and dotplot alignments
    • Create phylogenetic trees
    • Generate subalignments
    • Customize alignment displays

MegAlign
    Design primers or compare your own primers against a sequence template
    • Analyze primers for hairpins and dimers
    • View the consequences of primer mutations

PrimerSelect
    Locate restriction sites
    • Create six types of linear and circular maps
    • View all six reading frames with sites and features

SeqBuilder
    Edit and import sequences and annotations
    • Translate, back-translate and reverse complement sequences
    • Locate ORFs and create annotations
    • Cut/paste sequence with inclusive annotations
    • EditSeq included with all systems

EditSeq

 

Modules:
SeqBuilder
SeqMan Pro
GeneQuest
Protean
MegAlign
PrimerSelect
EditSeq

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Last Update: 3/7/2007