Emory University: School of Medicine: Research: Core Laboratories

Directory  |  Search

BIMCORE

Services  |  Tutorials and Education  |  Instructions  |  Prices  |  Facility Description  |  Research  |  Links

Bioinformatics and computational Research Projects

Computational and Life Sciences Date Name CS Collaboration Statistics Collaboration Description Rustom Antia, Biology Joel Bowman, Chemistry 01/05 BimCore Mentor: James Lu Stud: Ali Pirani Susmita Datta Cluster Validation for Microarray gene Expression Data 01/04 Scott Devine, Biochemistry Steve Pittard Transposable elements in the human genome REFERENCE Timothy Duong Michael Epstein, Human Genetics Deiter Jaeger, Biology 05/06 Christian Larsen, Christine Martens Mentor: James Lu Student: Lin Liu Vicki Hertzberg PIP: Flow cytometry database and analysis David Lynn, Chemistry Carlos Moreno, Pathology Junmin Peng, Human Genetics Computational Challenges in Proteomic PDF Biosketch Abstract Astrid Prinz, Biology Leslie Real, Biology James Thomas, Human Genetics Paula Vertino Kurt Warncke, Physics Michael Zwick, Human Genetices

Microarray Analysis Name Date/Time Description Margo Brinton, Svetlana Schorbic 06/04 Georgia State Transformed cells with and without infection. Moe 430A Georgia Chen 03/04 Behaviors of metastatic SCCHN cells Hu133A Marie Csete 04/04 Rat230-2 Magnus Edlund 12/05 CHEDA, Susmita Datta. Prostate cancer and associated lipid levels. Mark Feinberg, Sara Klucking 05/04 HIV and SIV infections. REFERENCE Thomas Genetta 04/05 Hu133 2.0 Edward Lin, Nana Gletsu 01/03 Surgery induced gut hormone alterations Hu133 2.0 Jorg Goronzy, Ines Colmegna 10/04, 08/06 Immune response in the Aged. John Hepler, TJ Murphy 04/04 Differential effects of Gqa, G14a and G15a on vascular smooth muscle cell survival and gene expression profiles. REFERENCE. Rat230-2 Shawn Hochman, Shruti Subramaniam 10/03 Spinal cord injuries. Moe 430A Sean Kimbro, Tea Okou 01/05 Breast cancer. Carlos Moreno Global Promoter Analysis of the Human Genome Identifies Functional Gene Clusters and Transcription Factor Binding Sites PDF Bibliography Lab Sheet Hu133A B Bali Pulendran, Troy Querec 08/04, 09/05 Stimulated or not stimulated DC’s. Microarray. Hu133A Bruce Sundstrom 08/05 Gene expression in post-partum cardiomyopathy. Hu133A KV Thrivikraman 09/04 Effects of glucocorticoid on diurnal gene expression profiles in selected rat brain regions. Rat230-2

Homology Modelling Name Date/Time Description Richard Compans, Sheguna Seth 01/05 Homology modeling of viral surface glycoprotein. (ser-f). REFERENCE Magnus Edlund 03/06 Sequence alignments and homology modeling of Nucleolin. Richard Compans, Sheguna Seth 01/05 Homology modeling of viral surface glycoprotein. (ser-f). REFERENCE Wylie Nichols 03/05 Sequence alignments and homology modeling of DNF-2. REFERENCE. Frank Novembre, Kelly Dennison 04/06 Homology modeling of pgm1. Charles Parkos, Winston Lee 06/06 Homology modeling of SIRPa and SIRPb. Mutational analysis. Richard Compans, Sheguna Seth 01/05 Homology modeling of viral surface glycoprotein. (ser-f). REFERENCE James Ritchie 10/03, 12/05 Von Willebrand Factor (A2 domain). ADAMTS 13. Jim Thomas, Alaine Keebaugh 08/06 Mutational analysis of HPRT1, and amino acid compensation. Kurt Warncke, Li Sun 07/05 Comparative Model of EutB from Coenzyme B12-Dependent Ethanolamine Ammonia-Lyase REFERENCE

Sequence Analysis Name Date/Time Description Guy Benian 09/05 Unc98 David Stephens, Deepa Machiah 08/06 How point mutation in TLR4 would effect the binding of MD-2 protein. David Stephens, Rhonda Hobb 04/06 Sequence analysis of NMB0065. Homology to NeuE. James Thomas, Alaine Case 04/05 Sequence comparisons of Olfactin.

Past BimCore collaborative Research groups. 2000 – 2004. List. Or Projects.

© 2001 Emory University For information contact: Kim Gernert Last Update: 05/14/2001