[ programming - tutorials
- research - chime -
mage - miscallaneous -
others' tutorials ]
In the area of programming... [
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| Web Tools |
Command Line Tools |
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I wrote a cgi interface to use ALL the features of
probe on the web
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I wrote a cgi program to convert
your pdb file into its one letter abbreviated code
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A molscript cgi page is
in the works
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I updated (and improved I hope) a cgi program for
Modeller on the web
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I have put an initial version of a cgi program for
Dock on the web
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I starting to put Threader
on the web and linking it to modeller
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adapted a web page counter - for us: how to
put it on your page
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Sequence Aligner aligns threader and blocks
results back onto the sequence
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Multiple
blast searching and with fetched extrez comparison
(help)
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Lab Scheduler that allows you to schedule
time on BIMCORE's computers
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a program that converts pdb files to gzipped files
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run: ~pmcconn/pdb2zip
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see: source
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a program that converts gzipped files back to pdb files
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run: ~pmcconn/zip2pdb
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see: source
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a program to give you the hex code for a color given the rgb numbers and
vice versa
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run: ~pmcconn/color
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see: source
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Multiplexed primer program
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run: ~pmcconn/Primer/src/primer
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see: source
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a program to replace columns in a pdb file
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run: ~pmcconn/pe
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see: source
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a program to recursively read comments from html files
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run: ~pmcconn/Data/readcomments
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see: source
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In the area of tutorials... [
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The permissions for gmb790r
have been set on a new page
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If you are a molmod login user, and can't remember how to copy files over
to the web server, see this cheet sheet
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Revamping of The Potassium
Channel Tutorial with clickable pictures and interesting pseudo-animations
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Tutorial on advanced
scripting of chime and javascript-chime interaction
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How to make your tutorials load up all the
frames for each link
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Sequence Analysis
Tutorial (blast, blocks, prodom, domo)
In the area of research... [
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Binding in 14-3-3 proteins
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Remodelling of IC140
In the area of Chime... [
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builder script
builder2 script
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toggle script
toggle2 script
toggle3 script
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atom picker
atom picker2
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floating windows
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zapping chime window on page unload
In the area of Mage... [
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Magelet applet example
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How to put in a Magelet applet
Other things I have done the summer of
'99... [ back to top ]
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Scanned some of the gmb790r
lectures into pdf format
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Backed up and cleaned up hard disks
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see a pop up window on test.html
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amino acid abbreviations
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molecules can be toggled
in chime with a little trick and see a zooming demo
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see a demo of a molecule
in VRML being clickable
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made a cover for a magazine
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make a link pop up multiple images
Tutorials written by other
BIMCORE staff [ back to top ]
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apolipoprotein E
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Immunoglobulins
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Reverse Transcriptase - I put
on first use of the pop-up help window we are incorporating
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Potassium channel - I helped
with some of the javascripting
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Protein Tyrosine Phosphatase
- I helped on the beginnings of this one
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DNA Polymerase I
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p53 DNA Regulation
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cAMP-dependent protein kinase
